Amitava Karmaker

Assistant Professor, University of Wisconsin-Stout
Mathematics, Statistics & Computer Science Department
College of Science, Technology, Engineering, Mathematics and Management

Office: 319 Jarvis Hall-Science Wing
Phone: 715-232-1376
Email: karmakera@uwstout.edu

Education

    • Ph D Computer Science
      University of Texas at San Antonio
      San Antonio, TX, 2008
    • BS Computer Science and Engineering
      Bangladesh University of Engineering and Technology (BUET)
      Dhaka, Bangladesh, 2003

Work Experience

    Academic - Post-Secondary

      • University of Wisconsin-Stout, Department of Mathematics, Statistics and Computer Science
        Assistant Professor
        Present
      • , Department of Computer Science
        Instructor
        Present

Intellectual Contributions

    Conference Proceeding

    • Karmaker, A. (2011). EMMA: An EM-based Imputation Technique for Handling Missing Sample-Values in Microarray Expression Profiles. , 2011 International Conference on Bioinformatics & Computational Biology (BIOCOMP).
    • Karmaker, A. (2011). Identification of Transcriptional Regulatory Elements by Functional Enrichment Analysis. , 182-187, 2011 International Conference on Bioinformatics & Computational Biology (BIOCOMP).
    • Karmaker, A. (2009). Analysis of Correlations between Genes and Tetrads of Transcription Factors Using Microarray Expression Profiles. , 148-152, 2009 International Conference on Bioinformatics & Computational Biology (BIOCOMP).
    • Karmaker, A. (2009). Outlier Detection in Spatial Databases Using Clustering Data Mining. , 1657-1658, 2009 Sixth International Conference on Information Technology: New Generations.
    • Karmaker, A. (2009). Providing 'Second Chance' to Students and Improving Retention. , 1672-1673, 2009 Sixth International Conference on Information Technology: New Generations.
    • Karmaker, A. (2008). Analysis of Correlations between Genes and Triads of Transcription Factors Using Microarray Expression Profiles. , 170-174, 2008 International Conference on Bioinformatics & Computational Biology (BIOCOMP).
    • Karmaker, A. (2007). An Approach for Analyzing DNA Copy Number Aberrations in Genome Using aCGH Profiles. , 214-217, 2007 International Conference on Bioinformatics & Computational Biology (BIOCOMP).
    • Karmaker, A. (2007). Discovery of Transcription Factors Using Protein Subcellular Localization Prediction and Gene Expression Profile Analysis. , 65-71, 2007 International Conference on Machine Learning: Models, Technologies & Applications (MLMTA).
    • Karmaker, A. (2007). Identification of cis-Regulatory Elements from Cross-Genome Comparison and Gene Expression Profile Analysis. , 31-36, 2007 International Conference on Bioinformatics & Computational Biology (BIOCOMP).
    • Karmaker, A. (2007). Identifying Correlations between Genes and Transcription Co-factors using Expression Profile. , 206-211, Seventh Atlantic Symposium on Computational Biology and Genome Informatics (CBGI).

    Journal Article

    • Karmaker, A. (2011). Transcriptional Networks in Epithelial-Mesenchymal Transition. PLoS ONE(6), 9.
    • Karmaker, A. (2007). An Iterative Refinement Approach for Data Cleaning. International Journal of Intelligent Data Analysis (IDA), 11(6).
    • Karmaker, A. (2007). CGHsweep: An Algorithm for Analyzing Chromosomal Aberrations in Genome using aCGH Profiles. In Silico Biology 7, 56.
    • Karmaker, A. (2007). Constructing Human Transcriptional Regulatory Subnets from Cross-Genome Comparison and Gene Expression Profile Analysis. OMICS: Journal of Integrative Biology, 11(4), 397-412.
    • Karmaker, A. (2007). Identifying Transcriptional Regulatory Elements in the Human and Mouse Genomes Using Tissue-Specific Gene Expression Profiles. Journal of Integrative Bioinformatics, 4(2).
    • Karmaker, A. (2005). A Boosting Approach to remove Class Label Noise (Extended version), Special issue on 'Ensemble Approaches'. International Journal on Hybrid Intelligent Systems (IJHIS), IOS Press, The Netherlands and Advanced Knowledge International.

Grants, Contracts, and Sponsored Research

    Grant

    • Christie, D., Bae, W. D., Karmaker, A., & Mason, T. R. Professional Development in Computer Science Education. Sponsored by UW-Stout Professional Development Grant, $3300.

Awards, Fellowships, Honors, and Scholarships

    Fellowship

    • Travel Fellowship, (2005)
    • Doctoral Fellowship, (2003)

    Honor

    • Dean's Scholarship, (2002)

    Scholarship

    • Technical Scholarship, (1999)